This web based application enables
automation of common functions applied to PDB files before virtual experimentation such as protein-ligand docking. The
Scientific Vector Language
(SVL) has been implemented in MOE, the Molecular Operating Environment released by the
Chemical Computing Group.
WebPDB will add Hydrogens, remove heteroatoms and ligands, correct and add missing residues through homology modeling with it's
FASTA sequence, and energy minimize your protein. A water accessible surface can also be generated.
The PDB file will be downloaded
from the RCSB Protein Data Bank
if you provide the PBD ID
or you can provide your own pdb file. If upload your own pdb file and select the homology model option then the corresponding pdb
id or FASTA sequence file will be required.
A tutorial for this code can be found here
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